STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG45471.1KEGG: xce:Xcel_0205 hypothetical protein. (255 aa)    
Predicted Functional Partners:
AEG45470.1
KEGG: xce:Xcel_0206 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.
 
     0.839
AEG43432.1
KEGG: xce:Xcel_0615 hypothetical protein.
  
     0.667
AEG45332.1
KEGG: xce:Xcel_2960 hypothetical protein.
  
     0.640
AEG45522.1
PFAM: Protein of unknown function DUF742; KEGG: xce:Xcel_0173 hypothetical protein.
  
     0.627
AEG45619.1
Sigma-70 region 4 type 2; PFAM: RNA polymerase sigma factor 70, region 4 type 2; KEGG: xce:Xcel_3302 hypothetical protein.
  
     0.616
AEG43434.1
KEGG: xce:Xcel_0617 tetratricopeptide repeat-containing protein.
  
     0.590
AEG45524.1
Integral membrane sensor signal transduction histidine kinase; KEGG: xce:Xcel_0171 histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; SMART: ATP-binding region, ATPase-like.
  
     0.542
AEG43290.1
PFAM: Glycosyl transferase, group 1; KEGG: xce:Xcel_0373 glycosyl transferase group 1 protein.
  
     0.541
AEG44547.1
KEGG: xce:Xcel_1986 hypothetical protein.
  
     0.527
AEG45430.1
Protein of unknown function DUF1080; KEGG: sgr:SGR_6942 putative large multi-functional protein; PFAM: Protein of unknown function DUF1080; PA14; Carbohydrate binding domain, family 6; SMART: PA14.
  
     0.518
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.