STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG45510.1ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: xce:Xcel_0179 binding-protein-dependent transport systems inner membrane component. (577 aa)    
Predicted Functional Partners:
AEG45511.1
KEGG: bcv:Bcav_3809 ABC transporter, periplasmic binding protein, ThiB subfamily; TIGRFAM: Thiamine ABC transporter periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1.
 
 
 0.993
AEG45509.1
Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: xce:Xcel_0180 ABC transporter-like protein; SMART: ATPase, AAA+ type, core.
 
 0.991
AEG43231.1
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mjl:Mjls_1962 extracellular solute-binding protein.
  
  
 0.723
AEG43652.1
KEGG: aai:AARI_15500 hypothetical protein.
  
  
 0.655
AEG43233.1
Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: bxe:Bxe_B1837 ABC Fe+3 transporter, ATPase subunit; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.
  
 0.493
AEG45512.1
KEGG: xce:Xcel_0177 hypothetical protein.
       0.471
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.