STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG45577.1PFAM: Penicillin-binding protein, transpeptidase; KEGG: xce:Xcel_3275 penicillin-binding protein transpeptidase. (666 aa)    
Predicted Functional Partners:
AEG45678.1
Peptidoglycan glycosyltransferase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; PASTA; KEGG: xce:Xcel_3357 glycosyl transferase family 51; SMART: PASTA.
 
 
 
 0.844
AEG44061.1
PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: xce:Xcel_1286 cell division protein FtsQ.
 
 
 0.832
AEG44058.1
KEGG: xce:Xcel_1283 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein; Belongs to the SEDS family.
 
 
 0.779
AEG42840.1
PFAM: Cell cycle protein; KEGG: xce:Xcel_0021 cell cycle protein; Belongs to the SEDS family.
 
 
 0.732
AEG45403.1
Peptidoglycan glycosyltransferase; KEGG: xce:Xcel_3041 glycosyl transferase family 51; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase.
 
 
 
0.660
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
 
  
 0.583
AEG45363.1
KEGG: xce:Xcel_2996 D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C.
  
   
 0.580
AEG45578.1
PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: mts:MTES_1148 D-alanyl-D-alanine carboxypeptidase.
     
 0.561
AEG45242.1
PFAM: SAF domain; KEGG: xce:Xcel_2816 SAF domain-containing protein.
  
     0.527
AEG43794.1
PFAM: Peptidase M23; KEGG: xce:Xcel_1037 peptidase M23.
 
   
 0.503
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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