STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG45582.1KEGG: xce:Xcel_3277 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Tetratricopeptide TPR-4; SMART: Transcription regulator LuxR, C-terminal. (1013 aa)    
Predicted Functional Partners:
AEG42901.1
Regulatory protein LuxR; KEGG: sma:SAV_3667 erythropoiesis-stimulating protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.
 
 
 0.883
AEG45583.1
KEGG: xce:Xcel_3278 protein serine phosphatase with GAF(s) sensor(s); PFAM: Sporulation stage II, protein E C-terminal; GAF; ATP-binding region, ATPase-like; SMART: Protein phosphatase 2C-related; GAF.
 
  
 0.794
AEG45581.1
Hypothetical protein.
       0.773
AEG45492.1
KEGG: xce:Xcel_0191 GAF sensor signal transduction histidine kinase; PFAM: GAF; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SMART: GAF; ATP-binding region, ATPase-like.
 
 
 0.665
AEG45580.1
KEGG: xce:Xcel_3276 hypothetical protein.
 
     0.617
AEG45141.1
KEGG: xce:Xcel_2600 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like.
 
   0.598
AEG45584.1
KEGG: xce:Xcel_3279 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-G type, actinobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.
  
  
 0.565
AEG45470.1
KEGG: xce:Xcel_0206 ECF subfamily RNA polymerase sigma-24 subunit; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.
  
  
 0.536
AEG43420.1
KEGG: bcv:Bcav_0103 histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like.
 
   0.512
AEG43424.1
KEGG: xce:Xcel_0607 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; SMART: ATP-binding region, ATPase-like.
 
   0.512
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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