STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG45663.1PFAM: Xylose isomerase, TIM barrel domain; KEGG: nda:Ndas_4059 xylose isomerase. (292 aa)    
Predicted Functional Partners:
AEG45669.1
Oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; KEGG: bcv:Bcav_0808 oxidoreductase domain protein.
 
    0.825
AEG44917.1
KEGG: nda:Ndas_4058 monosaccharide-binding protein.
 
    0.785
AEG45662.1
PKD domain containing protein; KEGG: svi:Svir_11080 glucose/sorbosone dehydrogenase; PFAM: PKD; Carbohydrate binding domain, family 6; SMART: PKD; Cellulose binding, type IV; LamG-like jellyroll fold.
 
     0.758
AEG44918.1
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: nda:Ndas_4057 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.684
AEG45666.1
PFAM: Extracellular ligand-binding receptor; KEGG: tro:trd_A0082 ABC-type branched-chain amino acid transport systems periplasmic component.
 
     0.662
AEG45664.1
ABC transporter related protein; KEGG: tro:trd_A0080 ABC-type branched-chain amino acid transport systems ATPase component; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
       0.618
AEG45665.1
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: nwi:Nwi_0668 ABC-type branched-chain amino acid transport systems ATPase component; SMART: ATPase, AAA+ type, core.
       0.618
AEG45667.1
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: tro:trd_A0083 ABC transporter ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
       0.618
AEG45668.1
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: apb:SAR116_1788 ABC transporter ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
       0.618
AEG44919.1
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: nda:Ndas_4056 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.605
Your Current Organism:
Isoptericola variabilis
NCBI taxonomy Id: 743718
Other names: I. variabilis 225, Isoptericola variabilis 225, Isoptericola variabilis str. 225, Isoptericola variabilis strain 225
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