STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHB62990.1KEGG: pjd:Pjdr2_1439 hypothetical protein. (373 aa)    
Predicted Functional Partners:
EHB62989.1
PFAM: glycosyl transferase group 1; KEGG: ppp:PHYPADRAFT_104339 hypothetical protein.
 
    0.862
EHB62991.1
KEGG: pjd:Pjdr2_1438 hypothetical protein.
 
    
0.811
EHB63389.1
KEGG: gym:GYMC10_0698 hypothetical protein.
 
     0.741
EHB62985.1
PFAM: NAD-dependent epimerase/dehydratase; KEGG: bwe:BcerKBAB4_3519 NAD-dependent epimerase/dehydratase; overlaps another CDS with the same product name.
 
    0.707
EHB63002.1
PFAM: glycosyl transferase group 1; KEGG: gym:GYMC10_1437 glycosyl transferase group 1.
 
    0.669
EHB62986.1
NAD-dependent epimerase/dehydratase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
    0.661
EHB62987.1
PFAM: polysaccharide biosynthesis protein CapD; KEGG: bmq:BMQ_pBM60010 UDP-GlcNAc C6 dehydratase.
       0.659
EHB62988.1
TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: bmq:BMQ_pBM60009 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
       0.659
EHB62932.1
KEGG: gym:GYMC10_1524 peptidoglycan-binding lysin domain protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
     0.641
EHB68086.1
KEGG: gym:GYMC10_4947 hypothetical protein.
  
     0.621
Your Current Organism:
Paenibacillus lactis
NCBI taxonomy Id: 743719
Other names: P. lactis 154, Paenibacillus lactis 154, Paenibacillus lactis str. 154, Paenibacillus lactis strain 154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.