STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF23308.1KEGG: pfo:Pfl01_1219 hypothetical protein. (165 aa)    
Predicted Functional Partners:
AEF23309.1
UPF0225 protein ychJ; KEGG: psa:PST_1519 hypothetical protein; HAMAP: Uncharacterised protein family UPF0225; PFAM: SEC-C motif; Belongs to the UPF0225 family.
  
    0.813
AEF23084.1
KEGG: pmy:Pmen_2891 Arc domain-containing protein.
  
     0.755
AEF22878.1
KEGG: psa:PST_1730 hypothetical protein.
  
     0.738
AEF24079.1
Putative sensor with HAMP domain; PFAM: HAMP linker domain; KEGG: pmy:Pmen_0617 hypothetical protein.
  
     0.712
AEF21481.1
PFAM: Protein of unknown function DUF2066; KEGG: pmy:Pmen_2995 hypothetical protein.
  
     0.703
AEF23302.1
Beta-agarase; KEGG: avn:Avin_19460 agarase.
  
     0.683
AEF21102.1
PFAM: Methyltransferase type 11; KEGG: pmy:Pmen_2478 methyltransferase type 11.
  
     0.676
AEF23443.1
KEGG: pmy:Pmen_4438 hypothetical protein.
  
     0.675
AEF23845.1
KEGG: pen:PSEEN3461 alginate biosynthesis protein AlgX-like.
  
     0.665
AEF23846.1
KEGG: pmy:Pmen_1668 poly(beta-D-mannuronate) lyase.
  
     0.656
Your Current Organism:
Pseudomonas fulva
NCBI taxonomy Id: 743720
Other names: P. fulva 12-X, Pseudomonas fulva 12-X, Pseudomonas fulva str. 12-X, Pseudomonas fulva strain 12-X
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.