STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV27624.1SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: xcb:XC_2747 cupin superfamily protein; region: Cupin_4; pfam08007. (484 aa)    
Predicted Functional Partners:
ADV27625.1
PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt3196 putative acetyltransferase.
       0.848
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.846
ADV27623.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo2616 lactoylglutathione lyase.
       0.786
ADV27622.1
KEGG: xca:xccb100_2781 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain-containing protein; fumarate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.662
ADV27626.1
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; KEGG: xca:xccb100_2785 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component.
       0.522
ADV25961.1
PFAM: HemY domain protein; KEGG: xal:XALc_3085 putative porphyrin biosynthesis protein.
  
     0.422
ADV28057.1
PFAM: protein of unknown function DUF615; KEGG: sml:Smlt3470 hypothetical protein; Belongs to the UPF0307 family.
  
     0.421
Your Current Organism:
Pseudoxanthomonas suwonensis 111
NCBI taxonomy Id: 743721
Other names: P. suwonensis 11-1, Pseudoxanthomonas suwonensis 11-1, Pseudoxanthomonas suwonensis str. 11-1, Pseudoxanthomonas suwonensis strain 11-1
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