STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADZ78225.1PFAM: FecR protein; KEGG: cpi:Cpin_7235 anti-FecI sigma factor, FecR. (331 aa)    
Predicted Functional Partners:
ADZ79484.1
KEGG: sli:Slin_4780 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2.
  
   0.784
ADZ81364.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: pdi:BDI_0239 putative RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2.
  
   0.763
ADZ77044.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: phe:Phep_1243 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.753
ADZ81203.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: phe:Phep_2246 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.749
ADZ79311.1
KEGG: cpi:Cpin_6568 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2.
  
   0.748
ADZ79051.1
KEGG: cpi:Cpin_3452 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2.
  
   0.743
ADZ81390.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: pdi:BDI_0239 putative RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2.
  
   0.730
ADZ78226.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: phe:Phep_3691 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.711
ADZ79500.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; KEGG: cpi:Cpin_7045 RNA polymerase, sigma-24 subunit, ECF subfamily; SMART: Transcription regulator LuxR, C-terminal.
  
   0.704
ADZ77570.1
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: phe:Phep_0303 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.690
Your Current Organism:
Sphingobacterium sp. 21
NCBI taxonomy Id: 743722
Other names: S. sp. 21
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