STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ79752.1KEGG: lby:Lbys_2335 hypothetical protein. (255 aa)    
Predicted Functional Partners:
ADZ79753.1
KEGG: lby:Lbys_0289 hypothetical protein.
 
     0.874
ADZ79754.1
PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dfe:Dfer_1794 OmpA/MotB domain protein.
 
     0.737
ADZ81310.1
PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bvu:BVU_0216 hypothetical protein.
  
  
 0.723
ADZ79049.1
PFAM: RagB/SusD; KEGG: lby:Lbys_0358 ragb/susd domain protein.
  
 
  0.681
ADZ79050.1
KEGG: lby:Lbys_0359 hypothetical protein.
  
     0.660
ADZ79048.1
PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: lby:Lbys_0357 TonB-dependent receptor plug.
  
  
  0.618
ADZ78258.1
KEGG: phe:Phep_3707 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
  0.577
ADZ78259.1
PFAM: Outer membrane efflux protein; KEGG: lby:Lbys_3123 outer membrane efflux protein.
  
  0.575
ADZ77578.1
KEGG: lby:Lbys_0109 glycoside hydrolase family 43; PFAM: Glycoside hydrolase, family 43; Coagulation factor 5/8 type, C-terminal; SMART: LamG-like jellyroll fold.
  
     0.564
ADZ79945.1
PFAM: Bacterial surface antigen (D15); KEGG: cpi:Cpin_3252 outer membrane protein.
  
 
 0.561
Your Current Organism:
Sphingobacterium sp. 21
NCBI taxonomy Id: 743722
Other names: S. sp. 21
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