STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYF_00295ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1585 aa)    
Predicted Functional Partners:
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.611
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.600
rpoD
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
    0.598
nfo
Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
  
  
 0.598
glyS
glycyl-tRNA synthetase; Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
MYF_00280
NIF3 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
       0.546
MYF_03190
Putative type II DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.528
MYF_03195
Hypothetical protein; Gene contains polyGA tract that may be subject to high frequency indel mutation; gene may be truncated at N-terminus based on match to ref|WP_014579778.1|; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.528
MYF_03205
Putative type I restriction endonuclease subunit S; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.528
Your Current Organism:
Mycoplasma flocculare
NCBI taxonomy Id: 743971
Other names: M. flocculare ATCC 27399, Mycoplasma flocculare ATCC 27399, Mycoplasma flocculare Ms42, Mycoplasma flocculare str. ATCC 27399, Mycoplasma flocculare strain ATCC 27399
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