STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MYF_03225ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (650 aa)    
Predicted Functional Partners:
MYF_03230
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
 
 
0.996
MYF_01275
ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.984
MYF_01280
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.921
MYF_00810
GDSL-like lipase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.822
MYF_00300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.807
MYF_01565
Putative lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.762
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.759
ksgA
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
   
 
 0.718
MYF_03015
Putative lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.658
MYF_01150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.642
Your Current Organism:
Mycoplasma flocculare
NCBI taxonomy Id: 743971
Other names: M. flocculare ATCC 27399, Mycoplasma flocculare ATCC 27399, Mycoplasma flocculare Ms42, Mycoplasma flocculare str. ATCC 27399, Mycoplasma flocculare strain ATCC 27399
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