STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scrB_1Sucrose-6-phosphate hydrolase; Belongs to the glycosyl hydrolase 32 family. (512 aa)    
Predicted Functional Partners:
treB
EIIBC-Tre.
  
 0.886
CUN78046.1
PTS system EIIBC component SA0186.
  
 0.819
bfrA
Beta-fructosidase.
 
     0.753
sacX
PTS system sac EIIBC component.
  
     0.739
ptsG
EIICBA-Glc.
 
  
 0.638
metC
Cystathionine beta-lyase.
  
  
 0.578
CUN38980.1
Uncharacterised protein.
       0.536
licT
Transcription antiterminator LicT.
 
   
 0.516
glcB_1
EIICBA-Glc 2.
  
  
 0.468
manP_1
EIIBCA-Man.
   
  
 0.438
Your Current Organism:
Collinsella aerofaciens
NCBI taxonomy Id: 74426
Other names: ATCC 25986, Bacteroides aerofaciens, C. aerofaciens, CCUG 28087, DSM 3979, Eubacterium aerofaciens, JCM 10188, NCTC 11838, Pseudobacterium aerofaciens
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