STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hycG_1Hydrogenase-3 component G. (260 aa)    
Predicted Functional Partners:
hycE_1
Hydrogenase-3 component E.
 
 0.999
hycE_2
Hydrogenase-3 component E; Belongs to the complex I 49 kDa subunit family.
 
 0.996
ndhI_1
NAD(P)H-quinone oxidoreductase subunit I.
 
 
 0.987
hycI
Hydrogenase 3 maturation protease.
  
 0.977
hyfE
Hydrogenase-4 component E.
 
  
 0.973
mrpA_2
Multiple resistance and pH homeostasis protein A.
 
 
 0.970
hyfB_1
Hydrogenase-4 component B.
 
  
 0.956
mrpA_1
Multiple resistance and pH homeostasis protein A.
 
  
 0.950
hycD
Hydrogenase 3 component D.
 
   
 0.944
hyfB_2
Hydrogenase-4 component B.
 
  
 0.931
Your Current Organism:
Collinsella aerofaciens
NCBI taxonomy Id: 74426
Other names: ATCC 25986, Bacteroides aerofaciens, C. aerofaciens, CCUG 28087, DSM 3979, Eubacterium aerofaciens, JCM 10188, NCTC 11838, Pseudobacterium aerofaciens
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