STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywqETyrosine-protein phosphatase YwqE. (216 aa)    
Predicted Functional Partners:
cap8A
Capsular polysaccharide type 8 biosynthesis protein cap8A.
 
 
 0.975
ywqD
Tyrosine-protein kinase YwqD.
 
  
 0.959
CUN44202.1
Putative acyltransferase.
       0.642
wcaJ_2
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
 
  
 0.479
wcaJ_1
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
 
  
 0.454
mshA
D-inositol-3-phosphate glycosyltransferase.
 
  
 0.451
phoR_1
Alkaline phosphatase synthesis sensor protein phoR.
  
    0.439
yycF_1
Transcriptional regulatory protein YycF.
       0.421
CUN38996.1
Polysaccharide biosynthesis protein.
 
   
 0.408
rsbV
Anti-anti-sigma-B factor; Belongs to the anti-sigma-factor antagonist family.
    
   0.407
Your Current Organism:
Collinsella aerofaciens
NCBI taxonomy Id: 74426
Other names: ATCC 25986, Bacteroides aerofaciens, C. aerofaciens, CCUG 28087, DSM 3979, Eubacterium aerofaciens, JCM 10188, NCTC 11838, Pseudobacterium aerofaciens
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