STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftsIPeptidoglycan synthase FtsI precursor. (689 aa)    
Predicted Functional Partners:
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
 
 0.989
MreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.983
mreB
Rod shape-determining protein MreB.
 
 0.962
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
 
 0.903
CUN53851.1
Rod shape-determining protein MreD.
  
  
 0.836
CUN53921.1
Uncharacterized protein/domain associated with GTPases.
 
     0.820
ponA
Penicillin-binding protein 1A/1B.
 
 
 
 0.811
CUN50837.1
Cell division protein FtsQ; Essential cell division protein.
  
 
 0.766
CUN53947.1
Radical SAM family uncharacterized protein.
  
    0.764
CUN53976.1
Uncharacterized protein conserved in bacteria.
       0.762
Your Current Organism:
Collinsella aerofaciens
NCBI taxonomy Id: 74426
Other names: ATCC 25986, Bacteroides aerofaciens, C. aerofaciens, CCUG 28087, DSM 3979, Eubacterium aerofaciens, JCM 10188, NCTC 11838, Pseudobacterium aerofaciens
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