STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN56754.1DegV domain-containing protein SAV1425. (288 aa)    
Predicted Functional Partners:
CUN38473.1
DAK2 domain fusion protein YloV.
 
   0.872
degV
EDD domain protein%2C DegV family.
  
     0.660
CUN99147.1
Fatty acid-binding protein TM_1468.
  
     0.634
CUN38493.1
Protein of uncharacterised function (DUF322).
 
    0.590
CUN72848.1
DegV domain-containing protein SPy_1493/M5005_Spy1226.
  
     0.557
lytF
Peptidoglycan endopeptidase LytF precursor.
       0.466
CUN56857.1
Cu(I)-responsive transcriptional regulator.
 
     0.452
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.414
Your Current Organism:
Collinsella aerofaciens
NCBI taxonomy Id: 74426
Other names: ATCC 25986, Bacteroides aerofaciens, C. aerofaciens, CCUG 28087, DSM 3979, Eubacterium aerofaciens, JCM 10188, NCTC 11838, Pseudobacterium aerofaciens
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