STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
senX3Signal-transduction histidine kinase senX3. (132 aa)    
Predicted Functional Partners:
CUN59302.1
Sensory histidine kinase CreC.
     0.979
yycF_2
Transcriptional regulatory protein YycF.
 
   0.898
ybhF
Uncharacterized ABC transporter ATP-binding protein YbhF.
 
     0.659
mprA
Mycobacterial persistence regulator A.
 
   0.652
CUN59412.1
Lantibiotic protection ABC transporter permease subunit%2C MutG family.
 
     0.650
phoR_2
Alkaline phosphatase synthesis sensor protein phoR.
 
 
 0.625
CUN60777.1
Lysine-arginine-ornithine-binding periplasmic protein.
  
 
 0.617
yycF_1
Transcriptional regulatory protein YycF.
 
   0.616
srrA
Staphylococcal respiratory response protein A.
 
   0.615
regX3
Sensory transduction protein regX3.
 
   0.606
Your Current Organism:
Collinsella aerofaciens
NCBI taxonomy Id: 74426
Other names: ATCC 25986, Bacteroides aerofaciens, C. aerofaciens, CCUG 28087, DSM 3979, Eubacterium aerofaciens, JCM 10188, NCTC 11838, Pseudobacterium aerofaciens
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