STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN59302.1Sensory histidine kinase CreC. (333 aa)    
Predicted Functional Partners:
yycF_2
Transcriptional regulatory protein YycF.
 
  0.989
senX3
Signal-transduction histidine kinase senX3.
     0.979
CUN59412.1
Lantibiotic protection ABC transporter permease subunit%2C MutG family.
 
     0.898
ybhF
Uncharacterized ABC transporter ATP-binding protein YbhF.
 
     0.887
CUN60777.1
Lysine-arginine-ornithine-binding periplasmic protein.
  
 
 0.617
CUN59458.1
Lantibiotic protection ABC transporter permease subunit%2C MutE/EpiE family.
       0.582
phoR_2
Alkaline phosphatase synthesis sensor protein phoR.
  
 
 0.577
CUN59373.1
Uncharacterised protein.
       0.569
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
 0.501
walR
Transcriptional regulatory protein walR.
  
   0.455
Your Current Organism:
Collinsella aerofaciens
NCBI taxonomy Id: 74426
Other names: ATCC 25986, Bacteroides aerofaciens, C. aerofaciens, CCUG 28087, DSM 3979, Eubacterium aerofaciens, JCM 10188, NCTC 11838, Pseudobacterium aerofaciens
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