STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvoA_1HTH-type transcriptional repressor yvoA. (126 aa)    
Predicted Functional Partners:
ecsA
ABC-type transporter ATP-binding protein EcsA.
  
 0.987
CUN60963.1
ABC-2 family transporter protein.
  
    0.765
cobB_1
NAD-dependent deacetylase.
  
    0.492
mntR_1
Manganese transport regulator.
  
    0.426
mntR_2
Manganese transport regulator.
  
    0.426
Your Current Organism:
Collinsella aerofaciens
NCBI taxonomy Id: 74426
Other names: ATCC 25986, Bacteroides aerofaciens, C. aerofaciens, CCUG 28087, DSM 3979, Eubacterium aerofaciens, JCM 10188, NCTC 11838, Pseudobacterium aerofaciens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.