STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypDHydrogenase expression/formation protein hypD. (370 aa)    
Predicted Functional Partners:
hypC
Hydrogenase isoenzymes formation protein hypC.
 
 
 0.998
hypE
Hydrogenase expression/formation protein hypE.
 
 0.997
hypF
Carbamoyltransferase hypF.
 
  
 0.943
hypB
Hydrogenase isoenzymes nickel incorporation protein hypB.
 
  
 0.893
porA
Pyruvate synthase subunit porA.
     
 0.509
hycE_1
Hydrogenase-3 component E.
     
 0.505
CUN63451.1
Putative nickel-responsive regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
       0.480
CUN63475.1
Uncharacterised protein.
       0.454
ppaX
Pyrophosphatase ppaX.
       0.446
hypA_2
Hydrogenase/urease nickel incorporation protein hypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.420
Your Current Organism:
Collinsella aerofaciens
NCBI taxonomy Id: 74426
Other names: ATCC 25986, Bacteroides aerofaciens, C. aerofaciens, CCUG 28087, DSM 3979, Eubacterium aerofaciens, JCM 10188, NCTC 11838, Pseudobacterium aerofaciens
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