STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiKSirohydrochlorin cobaltochelatase. (308 aa)    
Predicted Functional Partners:
cbiF
Cobalt-precorrin-4 C(11)-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 0.977
CobI
Precorrin-2 C20-methyltransferase.
 
 
 0.971
cobK
Precorrin-6A reductase.
 
  
 0.882
CUN36972.1
ABC-type Fe3+-citrate transport system%2C periplasmic component.
     0.873
cbiD
cobalt-precorrin-6A synthase; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
 
  
 0.862
cbiT
Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating].
 
  
 0.854
cbiC
Cobalt-precorrin-8X methylmutase.
 
  
 0.748
cbiH
Cobalt-precorrin-3B C(17)-methyltransferase.
 
  
 0.742
cobD
Threonine-phosphate decarboxylase.
 
    0.590
cobC_2
Alpha-ribazole phosphatase.
 
    0.575
Your Current Organism:
Collinsella aerofaciens
NCBI taxonomy Id: 74426
Other names: ATCC 25986, Bacteroides aerofaciens, C. aerofaciens, CCUG 28087, DSM 3979, Eubacterium aerofaciens, JCM 10188, NCTC 11838, Pseudobacterium aerofaciens
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