STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEJ18419.1OmpA/MotB domain protein. (523 aa)    
Predicted Functional Partners:
AEJ18392.1
Hypothetical protein.
  
 
 0.725
AEJ19979.1
Lytic transglycosylase catalytic.
 
 
 0.659
AEJ19494.1
Outer membrane chaperone Skp (OmpH).
  
 
 0.605
AEJ20589.1
Pyruvate ferredoxin/flavodoxin oxidoreductase.
  
   0.552
AEJ18418.1
Transcriptional regulator, CdaR.
       0.542
AEJ20732.1
NLP/P60 protein.
 
 
 0.539
AEJ19678.1
OmpA/MotB domain protein.
  
 
0.527
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.525
AEJ20838.1
Hypothetical protein.
  
 
   0.496
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
 
 0.484
Your Current Organism:
Treponema caldarium
NCBI taxonomy Id: 744872
Other names: Spirochaeta caldaria DSM 7334, Spirochaeta caldaria H1, T. caldarium DSM 7334, Treponema caldaria DSM 7334, Treponema caldaria H1, Treponema caldaria str. DSM 7334, Treponema caldaria strain DSM 7334, Treponema caldarium DSM 7334
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.