STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEJ18488.1FeS assembly protein SufB. (478 aa)    
Predicted Functional Partners:
AEJ18489.1
FeS assembly ATPase SufC.
 
 0.998
AEJ18486.1
Cysteine desulfurase, SufS subfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.983
AEJ18485.1
SUF system FeS assembly protein, NifU family.
 
  
 0.947
AEJ18321.1
ABC transporter related protein.
 
 
 0.938
AEJ18490.1
Protein of unknown function DUF59.
 
   
 0.921
AEJ18487.1
SufBD protein.
 
    
0.862
AEJ19391.1
Cysteine desulfurase.
 
 
 0.740
AEJ20465.1
Hypothetical protein.
  
  
 0.647
AEJ18491.1
NAD(P)H dehydrogenase (quinone).
       0.522
AEJ18492.1
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.491
Your Current Organism:
Treponema caldarium
NCBI taxonomy Id: 744872
Other names: Spirochaeta caldaria DSM 7334, Spirochaeta caldaria H1, T. caldarium DSM 7334, Treponema caldaria DSM 7334, Treponema caldaria H1, Treponema caldaria str. DSM 7334, Treponema caldaria strain DSM 7334, Treponema caldarium DSM 7334
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