STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEJ19144.1Hypothetical protein. (320 aa)    
Predicted Functional Partners:
AEJ20474.1
OmpA/MotB domain protein.
 
 
 0.691
AEJ19145.1
Protein of unknown function DUF438.
  
    0.672
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
 
     0.672
AEJ19146.1
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.668
AEJ20824.1
Fibronectin type III domain protein.
  
     0.666
AEJ18196.1
Hypothetical protein.
  
     0.659
AEJ19320.1
Restriction endonuclease.
  
    0.652
AEJ18624.1
Outer membrane lipoprotein carrier protein LolA.
 
  
 0.647
AEJ20235.1
Hypothetical protein.
 
   
 0.637
AEJ18926.1
Putative transcriptional regulator, Crp/Fnr family.
 
    0.629
Your Current Organism:
Treponema caldarium
NCBI taxonomy Id: 744872
Other names: Spirochaeta caldaria DSM 7334, Spirochaeta caldaria H1, T. caldarium DSM 7334, Treponema caldaria DSM 7334, Treponema caldaria H1, Treponema caldaria str. DSM 7334, Treponema caldaria strain DSM 7334, Treponema caldarium DSM 7334
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.