STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEJ19306.1Pentapeptide repeat protein. (195 aa)    
Predicted Functional Partners:
AEJ19305.1
Beta-lactamase domain protein.
   
 
 0.831
AEJ19979.1
Lytic transglycosylase catalytic.
   
 
 0.735
AEJ19767.1
DNA topoisomerase type IIA subunit B region 2 domain protein.
   
 
 0.725
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.725
AEJ19527.1
Tetratricopeptide TPR_2 repeat-containing protein.
  
  
 0.717
AEJ18708.1
GCN5-related N-acetyltransferase.
  
     0.700
AEJ20091.1
Protein of unknown function YGGT.
 
    0.700
AEJ19648.1
Hypothetical protein.
 
     0.679
AEJ20838.1
Hypothetical protein.
   
   0.665
AEJ20474.1
OmpA/MotB domain protein.
 
 
 0.658
Your Current Organism:
Treponema caldarium
NCBI taxonomy Id: 744872
Other names: Spirochaeta caldaria DSM 7334, Spirochaeta caldaria H1, T. caldarium DSM 7334, Treponema caldaria DSM 7334, Treponema caldaria H1, Treponema caldaria str. DSM 7334, Treponema caldaria strain DSM 7334, Treponema caldarium DSM 7334
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.