Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEJ19110.1 | AEJ19312.1 | Spica_0960 | Spica_1166 | CheC domain protein. | Protein of unknown function DUF342. | 0.657 |
AEJ19110.1 | AEJ19676.1 | Spica_0960 | Spica_1532 | CheC domain protein. | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.445 |
AEJ19110.1 | AEJ19811.1 | Spica_0960 | Spica_1668 | CheC domain protein. | Flagellar assembly protein FliH/Type III secretion system HrpE. | 0.678 |
AEJ19110.1 | AEJ20636.1 | Spica_0960 | Spica_2533 | CheC domain protein. | CheC domain protein. | 0.923 |
AEJ19311.1 | AEJ19312.1 | Spica_1165 | Spica_1166 | Hypothetical protein. | Protein of unknown function DUF342. | 0.705 |
AEJ19311.1 | argR | Spica_1165 | Spica_1167 | Hypothetical protein. | Arginine repressor, ArgR; Regulates arginine biosynthesis genes. | 0.493 |
AEJ19311.1 | pgi | Spica_1165 | Spica_1168 | Hypothetical protein. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.478 |
AEJ19312.1 | AEJ19110.1 | Spica_1166 | Spica_0960 | Protein of unknown function DUF342. | CheC domain protein. | 0.657 |
AEJ19312.1 | AEJ19311.1 | Spica_1166 | Spica_1165 | Protein of unknown function DUF342. | Hypothetical protein. | 0.705 |
AEJ19312.1 | AEJ19676.1 | Spica_1166 | Spica_1532 | Protein of unknown function DUF342. | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.574 |
AEJ19312.1 | AEJ19680.1 | Spica_1166 | Spica_1536 | Protein of unknown function DUF342. | Flagellar FlbD family protein. | 0.435 |
AEJ19312.1 | AEJ19811.1 | Spica_1166 | Spica_1668 | Protein of unknown function DUF342. | Flagellar assembly protein FliH/Type III secretion system HrpE. | 0.502 |
AEJ19312.1 | AEJ19816.1 | Spica_1166 | Spica_1673 | Protein of unknown function DUF342. | Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 0.507 |
AEJ19312.1 | AEJ20636.1 | Spica_1166 | Spica_2533 | Protein of unknown function DUF342. | CheC domain protein. | 0.690 |
AEJ19312.1 | argR | Spica_1166 | Spica_1167 | Protein of unknown function DUF342. | Arginine repressor, ArgR; Regulates arginine biosynthesis genes. | 0.561 |
AEJ19312.1 | fliW | Spica_1166 | Spica_1117 | Protein of unknown function DUF342. | Flagellar assembly factor fliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.548 |
AEJ19312.1 | pgi | Spica_1166 | Spica_1168 | Protein of unknown function DUF342. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.519 |
AEJ19676.1 | AEJ19110.1 | Spica_1532 | Spica_0960 | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | CheC domain protein. | 0.445 |
AEJ19676.1 | AEJ19312.1 | Spica_1532 | Spica_1166 | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | Protein of unknown function DUF342. | 0.574 |
AEJ19676.1 | AEJ19680.1 | Spica_1532 | Spica_1536 | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | Flagellar FlbD family protein. | 0.858 |
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