STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEJ19780.1Radical SAM domain protein. (534 aa)    
Predicted Functional Partners:
AEJ19777.1
Methyltransferase type 12.
 
  
 0.949
AEJ19778.1
Acylneuraminate cytidylyltransferase.
 
    0.888
AEJ19776.1
ATP-dependent carboxylate-amine ligase domain protein ATP-grasp.
 
   
 0.872
AEJ19779.1
Hypothetical protein.
       0.806
AEJ20188.1
Glycoside hydrolase family 13 domain protein.
 
 
   0.805
AEJ18926.1
Putative transcriptional regulator, Crp/Fnr family.
 
  
 0.799
AEJ18196.1
Hypothetical protein.
 
  
 0.798
AEJ19461.1
NHL repeat containing protein.
 
  
 0.796
AEJ19413.1
P83100 family protein.
 
    0.783
AEJ20235.1
Hypothetical protein.
 
     0.778
Your Current Organism:
Treponema caldarium
NCBI taxonomy Id: 744872
Other names: Spirochaeta caldaria DSM 7334, Spirochaeta caldaria H1, T. caldarium DSM 7334, Treponema caldaria DSM 7334, Treponema caldaria H1, Treponema caldaria str. DSM 7334, Treponema caldaria strain DSM 7334, Treponema caldarium DSM 7334
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