Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL89226.1Sarcosine oxidase subunit beta; Identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373. (422 aa)    
Predicted Functional Partners:
EFL89228.1
Sarcosine oxidase subunit alpha; Identified by match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
 0.990
EFL89227.1
Sarcosine oxidase subunit delta; Identified by match to protein family HMM PF04267.
 
  0.983
EFL88809.1
Sarcosine oxidase subunit alpha; Identified by match to protein family HMM PF01571; match to protein family HMM PF08669; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
 0.963
EFL88810.1
Sarcosine oxidase delta subunit family protein; Identified by match to protein family HMM PF04267; match to protein family HMM TIGR01374.
 
 0.943
EFL88808.1
Identified by match to protein family HMM PF04268; contains weak similarity to sarcosine oxidase gamma subunit.
 
  0.929
EFL89229.1
Sarcosine oxidase gamma subunit; Identified by match to protein family HMM PF04268.
  
  0.843
EFL88791.1
Ferredoxin-dependent glutamate synthase 1; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
    
 0.814
EFL89280.1
Serine--glyoxylate aminotransferase; Identified by match to protein family HMM PF00266.
   
 
 0.630
EFL90702.1
Dimethylglycine dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; match to protein family HMM PF08669; Belongs to the GcvT family.
  
 
  0.629
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.619
Your Current Organism:
Ahrensia sp. R2A130
NCBI taxonomy Id: 744979
Other names: A. sp. R2A130
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