STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO34547.1Dolichyl-phosphate beta-D-mannosyltransferase; Identified by match to protein family HMM PF00535; match to protein family HMM PF04138. (379 aa)    
Predicted Functional Partners:
EFO34546.1
Glycosyl transferase family protein.
 
 0.995
EFO33866.1
Identified by match to protein family HMM PF00535.
 
 
0.801
EFO33500.1
Putative Bactoprenol glucosyl transferase-like protein from prophage CPS-53; Identified by match to protein family HMM PF00535.
 
 
0.792
EFO34318.1
Glycosyl transferase family 2; Identified by match to protein family HMM PF00535.
  
 
 0.773
celA
Cellulose synthase catalytic subunit (UDP-forming); Identified by match to protein family HMM PF00535; match to protein family HMM PF07238; match to protein family HMM TIGR03030.
 
 
 0.773
EFO32054.1
Glycosyltransferase Alg8.
  
 
 0.773
EFO34548.1
Putative gag protein.
       0.732
EFO33340.1
Identified by match to protein family HMM PF00535; match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM PF08242.
 
 
 0.718
EFO31236.1
Identified by match to protein family HMM PF09335.
 
  
 0.707
EFO31237.1
Phosphoesterase PA-phosphatase related protein; Identified by match to protein family HMM PF01569.
 
  
 0.705
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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