STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO34117.12-dehydro-3-deoxygalactonokinase; Identified by match to protein family HMM PF05035; 2-dehydro-3-deoxygalactonokinase (2-keto-3-deoxy-galactonokinase) (2-oxo-3-deoxygalactonate kinase). (303 aa)    
Predicted Functional Partners:
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Identified by match to protein family HMM PF01081.
  
 0.998
EFO32012.1
D-galactonate dehydratase; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 0.969
EFO34118.1
3-oxoacyl-{acyl-carrier protein} reductase (3-ketoacyl-acyl carrier protein reductase); Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.
 
     0.886
EFO34119.1
Alpha-galactosidase; Identified by match to protein family HMM PF02065.
 
     0.877
EFO34120.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
 
     0.852
EFO34121.1
Putative ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 
     0.822
EFO34115.1
Beta-galactosidase 1; Identified by match to protein family HMM PF02449; match to protein family HMM PF08532.
 
     0.750
EFO32090.1
Mandelate racemase/muconate lactonizing enzyme family protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 0.688
EFO34122.1
Extracellular solute-binding protein; Identified by match to protein family HMM PF01547.
 
     0.679
EFO31215.1
Mandelate racemase/muconate lactonizing protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 0.660
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.