STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO34145.1M29 family peptidase. (348 aa)    
Predicted Functional Partners:
EFO34143.1
BEC protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
     0.945
EFO34144.1
S33 family peptidase; Identified by match to protein family HMM PF00561.
 
  
 0.924
EFO34142.1
2-succinylbenzoate--CoA ligase; Identified by match to protein family HMM PF00501.
 
     0.836
EFO34146.1
MarR family transcriptional regulator; Identified by match to protein family HMM PF01047.
 
    0.690
EFO30621.1
Salicylate 1-monooxygenase; Identified by match to protein family HMM PF01494.
  
 
 0.649
EFO34141.1
Trap dicarboxylate transporter- dctp subunit; Identified by match to protein family HMM PF03480.
 
     0.515
EFO34140.1
Tripartite ATP-independent periplasmic; Identified by match to protein family HMM PF04290.
 
     0.510
EFO29140.1
Lytic transglycosylase; Identified by match to protein family HMM PF01464.
 
     0.510
EFO29528.1
DUF81 domain containing protein; Identified by match to protein family HMM PF01925.
  
     0.482
EFO29132.1
Conserved hypothetical protein.
  
     0.418
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.