Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFO28591.1 | EFO33891.1 | TRICHSKD4_5957 | TRICHSKD4_1010 | Putative outer membrane adhesin like protein. | Regulator of chromosome condensation, RCC1. | 0.627 |
| EFO28591.1 | EFO34067.1 | TRICHSKD4_5957 | TRICHSKD4_0556 | Putative outer membrane adhesin like protein. | Proprotein convertase P; Identified by match to protein family HMM PF00082; match to protein family HMM PF00353; match to protein family HMM PF01483; match to protein family HMM PF06594. | 0.960 |
| EFO28591.1 | EFO34205.1 | TRICHSKD4_5957 | TRICHSKD4_0502 | Putative outer membrane adhesin like protein. | Conserved hypothetical protein. | 0.556 |
| EFO32093.1 | EFO34205.1 | TRICHSKD4_2682 | TRICHSKD4_0502 | Phytanoyl-CoA dioxygenase superfamily protein; Identified by match to protein family HMM PF05721. | Conserved hypothetical protein. | 0.579 |
| EFO33891.1 | EFO28591.1 | TRICHSKD4_1010 | TRICHSKD4_5957 | Regulator of chromosome condensation, RCC1. | Putative outer membrane adhesin like protein. | 0.627 |
| EFO33891.1 | EFO34067.1 | TRICHSKD4_1010 | TRICHSKD4_0556 | Regulator of chromosome condensation, RCC1. | Proprotein convertase P; Identified by match to protein family HMM PF00082; match to protein family HMM PF00353; match to protein family HMM PF01483; match to protein family HMM PF06594. | 0.937 |
| EFO33891.1 | EFO34205.1 | TRICHSKD4_1010 | TRICHSKD4_0502 | Regulator of chromosome condensation, RCC1. | Conserved hypothetical protein. | 0.746 |
| EFO33891.1 | EFO34474.1 | TRICHSKD4_1010 | TRICHSKD4_0259 | Regulator of chromosome condensation, RCC1. | Identified by match to protein family HMM PF02104. | 0.701 |
| EFO33891.1 | dinB | TRICHSKD4_1010 | TRICHSKD4_5143 | Regulator of chromosome condensation, RCC1. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.734 |
| EFO33891.1 | secY | TRICHSKD4_1010 | TRICHSKD4_5016 | Regulator of chromosome condensation, RCC1. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.701 |
| EFO34067.1 | EFO28591.1 | TRICHSKD4_0556 | TRICHSKD4_5957 | Proprotein convertase P; Identified by match to protein family HMM PF00082; match to protein family HMM PF00353; match to protein family HMM PF01483; match to protein family HMM PF06594. | Putative outer membrane adhesin like protein. | 0.960 |
| EFO34067.1 | EFO33891.1 | TRICHSKD4_0556 | TRICHSKD4_1010 | Proprotein convertase P; Identified by match to protein family HMM PF00082; match to protein family HMM PF00353; match to protein family HMM PF01483; match to protein family HMM PF06594. | Regulator of chromosome condensation, RCC1. | 0.937 |
| EFO34067.1 | EFO34205.1 | TRICHSKD4_0556 | TRICHSKD4_0502 | Proprotein convertase P; Identified by match to protein family HMM PF00082; match to protein family HMM PF00353; match to protein family HMM PF01483; match to protein family HMM PF06594. | Conserved hypothetical protein. | 0.784 |
| EFO34067.1 | EFO34474.1 | TRICHSKD4_0556 | TRICHSKD4_0259 | Proprotein convertase P; Identified by match to protein family HMM PF00082; match to protein family HMM PF00353; match to protein family HMM PF01483; match to protein family HMM PF06594. | Identified by match to protein family HMM PF02104. | 0.519 |
| EFO34067.1 | dinB | TRICHSKD4_0556 | TRICHSKD4_5143 | Proprotein convertase P; Identified by match to protein family HMM PF00082; match to protein family HMM PF00353; match to protein family HMM PF01483; match to protein family HMM PF06594. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.692 |
| EFO34067.1 | secY | TRICHSKD4_0556 | TRICHSKD4_5016 | Proprotein convertase P; Identified by match to protein family HMM PF00082; match to protein family HMM PF00353; match to protein family HMM PF01483; match to protein family HMM PF06594. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.545 |
| EFO34205.1 | EFO28591.1 | TRICHSKD4_0502 | TRICHSKD4_5957 | Conserved hypothetical protein. | Putative outer membrane adhesin like protein. | 0.556 |
| EFO34205.1 | EFO32093.1 | TRICHSKD4_0502 | TRICHSKD4_2682 | Conserved hypothetical protein. | Phytanoyl-CoA dioxygenase superfamily protein; Identified by match to protein family HMM PF05721. | 0.579 |
| EFO34205.1 | EFO33891.1 | TRICHSKD4_0502 | TRICHSKD4_1010 | Conserved hypothetical protein. | Regulator of chromosome condensation, RCC1. | 0.746 |
| EFO34205.1 | EFO34067.1 | TRICHSKD4_0502 | TRICHSKD4_0556 | Conserved hypothetical protein. | Proprotein convertase P; Identified by match to protein family HMM PF00082; match to protein family HMM PF00353; match to protein family HMM PF01483; match to protein family HMM PF06594. | 0.784 |
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