STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO34218.1Transposase, IS4 family protein. (132 aa)    
Predicted Functional Partners:
EFO34219.1
Transposase, IS4 family; Identified by match to protein family HMM PF01609.
     0.950
EFO29520.1
Transposase, IS4 family; Identified by match to protein family HMM PF01609.
     0.790
EFO33556.1
Transposase, IS4 family; Identified by match to protein family HMM PF01609.
     0.775
EFO34242.1
Transposase, IS4 family; Identified by match to protein family HMM PF01609.
     0.774
EFO29241.1
Transposase.
 
     0.676
EFO28672.1
Transposase, IS4 family protein.
 
     0.562
EFO34220.1
Succinate dehydrogenase iron-sulfur protein.
       0.482
EFO28673.1
Transposase, IS4 family protein.
 
     0.438
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.