STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO33847.1Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242. (404 aa)    
Predicted Functional Partners:
EFO33845.1
Amine oxidase; Identified by match to protein family HMM PF01593.
  
 0.995
EFO33846.1
Conserved hypothetical protein; Identified by match to protein family HMM PF07103.
  
 0.993
EFO31800.1
Major facilitator transporter.
 
  
 0.736
EFO30267.1
Sarcosine oxidase subunit alpha; Identified by match to protein family HMM PF01571; match to protein family HMM PF07992; Belongs to the GcvT family.
    
  0.607
EFO29910.1
Sarcosine oxidase subunit alpha; Identified by match to protein family HMM PF01571; match to protein family HMM PF08669; match to protein family HMM TIGR01372; Belongs to the GcvT family.
    
  0.607
EFO33849.1
Transcriptional activator ChrR; Identified by match to protein family HMM TIGR02451.
 
   
 0.580
EFO31612.1
Dimethylglycine dehydrogenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; match to protein family HMM PF08669; Belongs to the GcvT family.
    
  0.534
EFO29511.1
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01571; match to protein family HMM PF08669; Belongs to the GcvT family.
    
  0.534
EFO32329.1
ATP:cob(I)alamin adenosyltransferase; Identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; Belongs to the Cob(I)alamin adenosyltransferase family.
   
    0.510
EFO33848.1
Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.498
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.