EFO33854.1 protein (Roseibium sp. TrichSKD4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFO33854.1

alanyl-tRNA synthetase; Identified by match to protein family HMM PF07973. (240 aa)

Predicted Functional Partners:

sseA

0.775

alaS

0.760

EFO33855.1

0.757

EFO33853.1

0.580

EFO33851.1

0.549

EFO33852.1

0.479

Your Current Organism:

Roseibium sp. TrichSKD4

NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFO33851.1	EFO33852.1	TRICHSKD4_0968	TRICHSKD4_0969	Cysteine synthase 1; Identified by match to protein family HMM PF00291.	Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.	0.857
EFO33851.1	EFO33853.1	TRICHSKD4_0968	TRICHSKD4_0970	Cysteine synthase 1; Identified by match to protein family HMM PF00291.	Lysine exporter protein LysE/YggA; Identified by match to protein family HMM PF01810.	0.585
EFO33851.1	EFO33854.1	TRICHSKD4_0968	TRICHSKD4_0971	Cysteine synthase 1; Identified by match to protein family HMM PF00291.	alanyl-tRNA synthetase; Identified by match to protein family HMM PF07973.	0.549
EFO33851.1	EFO33855.1	TRICHSKD4_0968	TRICHSKD4_0972	Cysteine synthase 1; Identified by match to protein family HMM PF00291.	Glutathione-dependent formaldehyde-activating, GFA; Identified by match to protein family HMM PF04828.	0.440
EFO33851.1	sseA	TRICHSKD4_0968	TRICHSKD4_0973	Cysteine synthase 1; Identified by match to protein family HMM PF00291.	3-mercaptopyruvate sulfurtransferase; Identified by match to protein family HMM PF00581.	0.841
EFO33852.1	EFO33851.1	TRICHSKD4_0969	TRICHSKD4_0968	Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.	Cysteine synthase 1; Identified by match to protein family HMM PF00291.	0.857
EFO33852.1	EFO33853.1	TRICHSKD4_0969	TRICHSKD4_0970	Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.	Lysine exporter protein LysE/YggA; Identified by match to protein family HMM PF01810.	0.620
EFO33852.1	EFO33854.1	TRICHSKD4_0969	TRICHSKD4_0971	Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.	alanyl-tRNA synthetase; Identified by match to protein family HMM PF07973.	0.479
EFO33852.1	EFO33855.1	TRICHSKD4_0969	TRICHSKD4_0972	Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.	Glutathione-dependent formaldehyde-activating, GFA; Identified by match to protein family HMM PF04828.	0.464
EFO33852.1	sseA	TRICHSKD4_0969	TRICHSKD4_0973	Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.	3-mercaptopyruvate sulfurtransferase; Identified by match to protein family HMM PF00581.	0.549
EFO33853.1	EFO33851.1	TRICHSKD4_0970	TRICHSKD4_0968	Lysine exporter protein LysE/YggA; Identified by match to protein family HMM PF01810.	Cysteine synthase 1; Identified by match to protein family HMM PF00291.	0.585
EFO33853.1	EFO33852.1	TRICHSKD4_0970	TRICHSKD4_0969	Lysine exporter protein LysE/YggA; Identified by match to protein family HMM PF01810.	Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.	0.620
EFO33853.1	EFO33854.1	TRICHSKD4_0970	TRICHSKD4_0971	Lysine exporter protein LysE/YggA; Identified by match to protein family HMM PF01810.	alanyl-tRNA synthetase; Identified by match to protein family HMM PF07973.	0.580
EFO33853.1	EFO33855.1	TRICHSKD4_0970	TRICHSKD4_0972	Lysine exporter protein LysE/YggA; Identified by match to protein family HMM PF01810.	Glutathione-dependent formaldehyde-activating, GFA; Identified by match to protein family HMM PF04828.	0.568
EFO33853.1	sseA	TRICHSKD4_0970	TRICHSKD4_0973	Lysine exporter protein LysE/YggA; Identified by match to protein family HMM PF01810.	3-mercaptopyruvate sulfurtransferase; Identified by match to protein family HMM PF00581.	0.569
EFO33854.1	EFO33851.1	TRICHSKD4_0971	TRICHSKD4_0968	alanyl-tRNA synthetase; Identified by match to protein family HMM PF07973.	Cysteine synthase 1; Identified by match to protein family HMM PF00291.	0.549
EFO33854.1	EFO33852.1	TRICHSKD4_0971	TRICHSKD4_0969	alanyl-tRNA synthetase; Identified by match to protein family HMM PF07973.	Cardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.	0.479
EFO33854.1	EFO33853.1	TRICHSKD4_0971	TRICHSKD4_0970	alanyl-tRNA synthetase; Identified by match to protein family HMM PF07973.	Lysine exporter protein LysE/YggA; Identified by match to protein family HMM PF01810.	0.580
EFO33854.1	EFO33855.1	TRICHSKD4_0971	TRICHSKD4_0972	alanyl-tRNA synthetase; Identified by match to protein family HMM PF07973.	Glutathione-dependent formaldehyde-activating, GFA; Identified by match to protein family HMM PF04828.	0.757
EFO33854.1	alaS	TRICHSKD4_0971	TRICHSKD4_4330	alanyl-tRNA synthetase; Identified by match to protein family HMM PF07973.	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.	0.760