STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO33886.1Conserved hypothetical protein. (164 aa)    
Predicted Functional Partners:
EFO33885.1
Putative transcriptional regulator.
       0.773
EFO33887.1
N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510.
     
 0.591
EFO33883.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.510
EFO33884.1
Putative cation antiporter NADH dehydrogenase subunit.
       0.510
EFO33889.1
Conserved hypothetical protein.
       0.412
EFO33890.1
Conserved hypothetical protein.
       0.412
EFO33891.1
Regulator of chromosome condensation, RCC1.
       0.404
EFO33892.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.404
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.