STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO33891.1Regulator of chromosome condensation, RCC1. (523 aa)    
Predicted Functional Partners:
EFO33627.1
NADH-quinone oxidoreductase subunit m; Identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972.
    
 
 0.976
EFO34067.1
Proprotein convertase P; Identified by match to protein family HMM PF00082; match to protein family HMM PF00353; match to protein family HMM PF01483; match to protein family HMM PF06594.
  
 0.937
EFO31244.1
Sulfate transporter 4.1, ic; Identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.
    
   0.848
EFO28978.1
Putative sulfate transporter YbaR; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.
    
   0.848
EFO33892.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.773
EFO30418.1
WD-containing repeat protein; Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
   
 0.762
EFO33889.1
Conserved hypothetical protein.
       0.757
EFO33890.1
Conserved hypothetical protein.
       0.757
EFO31951.1
Hypothetical protein; Identified by Glimmer3; putative.
   
  0.756
EFO30244.1
Hypothetical protein; Identified by Glimmer3; putative.
   
  0.756
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.