STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO32777.1Inner membrane ABC transporter permease protein YejE; Identified by match to protein family HMM PF00528. (382 aa)    
Predicted Functional Partners:
EFO32778.1
Putative ATP-binding abc transporter protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.
 
 0.991
EFO32776.1
Inner membrane ABC transporter permease protein YejB; Identified by match to protein family HMM PF00528.
  
 0.988
EFO28910.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.
 
 0.955
EFO32775.1
Putative binding protein; Identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409.
 
 
 0.953
EFO32774.1
Putative binding protein; Identified by match to protein family HMM PF00496.
 
 
 0.952
EFO34157.1
Glutathione import ATP-binding protein GsiA; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 0.914
EFO30012.1
Putative binding protein; Identified by match to protein family HMM PF00496.
 
 
 0.867
EFO32170.1
Glutathione import ATP-binding protein GsiA; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.
  
  0.823
EFO33276.1
Oligopeptide transport ATP-binding protein OppD; Identified by match to protein family HMM PF00005.
  
 0.818
EFO30551.1
Glutathione import ATP-binding protein GsiA; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.
  
  0.793
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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