STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pqqCCoenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ. (278 aa)    
Predicted Functional Partners:
pqqB
Coenzyme PQQ synthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
  
 0.998
pqqE
Coenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).
 
  
 0.980
EFO33002.1
Bifunctional coenzyme PQQ synthesis protein C/D; Identified by match to protein family HMM PF05402.
 
  
 0.972
EFO30279.1
Methanol dehydrogenase subunit 1; Identified by match to protein family HMM PF01011; match to protein family HMM TIGR03075.
 
  
 0.791
EFO32935.1
Quinoprotein ethanol dehydrogenase; Identified by match to protein family HMM PF01011; match to protein family HMM TIGR03075.
 
  
 0.717
EFO30286.1
Sulfur oxidation protein SoxZ; Identified by match to protein family HMM PF08770.
 
     0.655
EFO33686.1
Quinoprotein ethanol dehydrogenase; Identified by match to protein family HMM PF01011; match to protein family HMM TIGR03075.
 
  
 0.647
EFO30269.1
Yvtn beta-propeller repeat-containing protein; Identified by match to protein family HMM TIGR02276.
  
     0.631
EFO30270.1
Conserved hypothetical protein.
  
     0.627
EFO30274.1
Putative signal peptide protein; Identified by match to protein family HMM PF08770.
 
     0.587
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.