STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO33157.1Type II and III secretion system protein; Identified by match to protein family HMM PF00263; match to protein family HMM PF04972; Belongs to the bacterial secretin family. (482 aa)    
Predicted Functional Partners:
cpaB
Flp pilus assembly protein CpaB; Identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177.
 
  
 0.989
EFO33159.1
Pilus assembly protein CpaE.
 
  
 0.976
EFO33160.1
Pilus assembly protein; Identified by match to protein family HMM PF00437.
  
 0.973
EFO33162.1
Type II secretion system protein; Identified by match to protein family HMM PF00482.
 
  
 0.955
EFO33161.1
Type II secretion system protein; Identified by match to protein family HMM PF00482.
 
  
 0.943
EFO33158.1
Pilus biogenesis lipoprotein CpaD; Identified by match to protein family HMM PF09476; match to protein family HMM TIGR02522.
 
   
 0.927
EFO33155.1
Peptidase A24A prepilin type IV; Identified by match to protein family HMM PF01478.
 
  
 0.915
EFO33154.1
Flp/Fap pilin component; Identified by match to protein family HMM PF04964.
 
  
 0.800
EFO33163.1
TPR repeat-containing protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
  
 0.787
EFO32314.1
Putative Flp pilus assembly protein TadG.
 
  
 0.755
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.