STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO33285.1Binding-protein-dependent transport systems inner membrane component. (177 aa)    
Predicted Functional Partners:
EFO33286.1
Binding-protein-dependent transport systems inner membrane component.
     0.990
EFO33287.1
Sugar ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 
 0.976
EFO33284.1
Extracellular solute-binding protein; Identified by match to protein family HMM PF01547.
 
  0.944
EFO33288.1
ATP-binding transport protein SmoK; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
 
  0.936
EFO33290.1
Mannitol 2-dehydrogenase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.
 
     0.896
EFO32073.1
Extracellular solute-binding protein; Identified by match to protein family HMM PF01547.
  
  0.880
polS
L-iditol 2-dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.
 
     0.834
EFO34120.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
 
  0.764
EFO32900.1
Extracellular solute-binding protein; Identified by match to protein family HMM TIGR01409.
  
  0.747
EFO29392.1
Putative extracellular solute-binding protein; Identified by match to protein family HMM PF01547.
  
  0.745
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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