STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO33301.1Trap dicarboxylate transporter- dctm subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786. (443 aa)    
Predicted Functional Partners:
EFO33299.1
Trap dicarboxylate transporter, dctp subunit; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409.
 
 
 0.988
EFO33300.1
Trap dicarboxylate transporter, dctq subunit; Identified by match to protein family HMM PF04290.
 
 0.972
EFO33303.1
Gluconate 5-dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.
 
     0.894
EFO33304.1
Alcohol dehydrogenase; Identified by match to protein family HMM PF00107; match to protein family HMM PF00899; match to protein family HMM PF08240.
 
  
  0.880
EFO33305.1
Altronate hydrolase.
 
     0.831
EFO34163.1
Trap dicarboxylate transporter, dctp subunit; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787.
  
 0.810
EFO33306.1
Altronate dehydratase; Identified by match to protein family HMM PF04295.
 
     0.806
hisD_3
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
     0.799
EFO32109.1
Trap dicarboxylate transporter- dctp subunit; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409.
 
  
 0.684
EFO34150.1
Trap dicarboxylate transporter- dctp subunit; Identified by match to protein family HMM PF03480.
 
  
 0.677
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.