STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO32156.1Putative translocator protein, LysE family. (198 aa)    
Predicted Functional Partners:
EFO32155.1
Transcriptional regulator, GntR family/aminotransferase, classes I and II family protein; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.
 
     0.659
EFO29552.1
Conserved hypothetical protein.
  
     0.490
EFO31975.1
isoleucyl-tRNA synthetase.
  
     0.466
EFO29072.1
Putative N- transmembrane anchored protein.
  
     0.454
EFO30011.1
Putative acid-CoA ligase.
  
     0.440
EFO28949.1
Putative D-amino acid oxidase; Identified by match to protein family HMM PF01266.
  
     0.411
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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