STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO32213.1Import inner membrane translocase subunit Tim44; Identified by match to protein family HMM PF04280. (244 aa)    
Predicted Functional Partners:
EFO32211.1
Smr protein/MutS2; Identified by match to protein family HMM PF01713.
 
     0.779
EFO31485.1
Conserved hypothetical protein; Identified by match to protein family HMM PF06242.
  
     0.761
holA
DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128.
 
     0.732
addB
Double-strand break repair protein AddB; Identified by match to protein family HMM TIGR02786.
  
     0.729
EFO32212.1
Putative outer membrane-bound lytic murein transglycosylase; Identified by match to protein family HMM PF03562; match to protein family HMM PF06725.
       0.727
EFO32210.1
XRE family transcriptional regulator; Identified by match to protein family HMM PF01381.
 
     0.726
secB
Protein-export chaperone SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
 
     0.715
EFO33396.1
Putative signal peptide protein.
  
     0.684
EFO32214.1
FxsA; Identified by match to protein family HMM PF04186.
       0.661
EFO31014.1
Conserved hypothetical protein; Identified by match to protein family HMM PF07031.
  
     0.660
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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