STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO32432.1Twin-arginine translocation pathway signal; Identified by match to protein family HMM PF07433. (352 aa)    
Predicted Functional Partners:
EFO32434.1
Identified by match to protein family HMM PF06537.
 
  
 0.973
EFO32433.1
Putative exported protein; Identified by match to protein family HMM PF09375.
 
  
 0.967
EFO32435.1
Imelysin; Identified by match to protein family HMM PF09375.
 
    0.910
EFO33432.1
Alkaline phosphatase; Overlaps another CDS with the same product name.
  
     0.511
EFO32430.1
Identified by match to protein family HMM PF05170.
       0.485
EFO33433.1
Alkaline phosphatase; Overlaps another CDS with the same product name.
  
     0.451
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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