STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO32630.1N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01471; match to protein family HMM PF01510. (258 aa)    
Predicted Functional Partners:
EFO32625.1
Tail fiber protein; Identified by match to protein family HMM PF00041.
 
    0.646
EFO32624.1
D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS; Identified by match to protein family HMM PF00877.
 
  
 0.633
EFO32631.1
Inadl protein.
     
 0.588
EFO32632.1
High mobility group.
       0.570
EFO32633.1
Conserved hypothetical protein.
       0.570
EFO32634.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.570
EFO32623.1
Conserved hypothetical protein; Identified by match to protein family HMM PF08875.
  
    0.554
EFO32626.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.541
EFO32622.1
Short-chain dehydrogenase/reductase SDR.
       0.535
EFO32627.1
Hypothetical protein; Identified by Glimmer3; putative.
       0.535
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.