STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO32649.1ABC transporter permease; Identified by match to protein family HMM PF02687. (855 aa)    
Predicted Functional Partners:
EFO32650.1
Lipoprotein-releasing system ATP-binding protein LolD 2; Identified by match to protein family HMM PF00005.
 
     0.957
tesA
Arylesterase; Identified by match to protein family HMM PF00657.
 
     0.934
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 
 0.676
EFO28747.1
Conserved hypothetical protein.
  
 
 0.657
EFO33634.1
Lipoprotein-releasing system transmembrane protein LolC; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212.
    
 0.525
EFO29316.1
Conserved domain protein; Identified by match to protein family HMM PF08904.
  
     0.514
EFO32648.1
Inner membrane protein YbhL; Identified by match to protein family HMM PF01027; Belongs to the BI1 family.
       0.508
tas
Tas protein; Identified by match to protein family HMM PF00248.
       0.503
EFO32295.1
Putative lipoprotein.
  
     0.466
EFO32851.1
7.5 kda chlorosome protein; Identified by match to protein family HMM PF01636; match to protein family HMM PF02367; match to protein family HMM PF02958; match to protein family HMM TIGR00150.
  
     0.456
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.