STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO32689.1Gamma-butyrobetaine,2-oxoglutarate dioxygenase; Identified by match to protein family HMM PF02668. (380 aa)    
Predicted Functional Partners:
EFO32688.1
Class II aldolase/adducin family protein; Identified by match to protein family HMM PF00596.
 
     0.923
EFO32690.1
LysR family transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.832
lcdH
Bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
  
  
  0.800
EFO30209.1
Taurine ABC transporter, periplasmic taurine-binding protein.
  
 
 0.752
EFO30746.1
Rhodanese domain-containing protein.
    
 0.706
EFO32011.1
Betaine aldehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
   
 0.704
EFO29378.1
Putative aldehyde dehydrogenase; Identified by match to protein family HMM PF00171.
   
 0.704
EFO34132.1
Pyruvate dehydrogenase; Identified by match to protein family HMM PF00205; match to protein family HMM PF00355; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.
  
 
 0.701
EFO30883.1
Ferredoxin; Identified by match to protein family HMM PF00111; match to protein family HMM PF00970.
   
 
  0.691
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
   
 
  0.597
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.