STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFO32142.1Phage late control D protein (GPD); Identified by match to protein family HMM PF05954. (373 aa)    
Predicted Functional Partners:
EFO32137.1
Phage tail sheath protein; Identified by match to protein family HMM PF04984.
 
   0.949
EFO32130.1
GPW/gp25.
 
   0.940
EFO32138.1
Phage tail tube protein FII; Identified by match to protein family HMM PF04985.
 
    0.931
EFO31337.1
GPW/gp25; Identified by match to protein family HMM PF04965.
 
   0.926
EFO33209.1
Putative tail sheath protein.
 
   0.916
EFO31329.1
Phage tail sheath protein; Identified by match to protein family HMM PF04984.
 
   0.916
EFO30926.1
Tail sheath protein.
 
   0.916
EFO32499.1
Phage tail sheath protein.
 
   0.914
EFO31686.1
Putative phage tail sheath protein.
 
   0.902
EFO30931.1
Putative phage tail protein; Identified by match to protein family HMM PF09684; match to protein family HMM TIGR01634.
 
  
 0.896
Your Current Organism:
Roseibium sp. TrichSKD4
NCBI taxonomy Id: 744980
Other names: R. sp. TrichSKD4
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